Diffusion generative models, famous for their performance in image generation, are popular in various cross-domain applications. However, their use in the communication community has been mostly limited to auxiliary tasks like data modeling and feature extraction. These models hold greater promise for fundamental problems in network optimization compared to traditional machine learning methods. Discriminative deep learning often falls short due to its single-step input-output mapping and lack of global awareness of the solution space, especially given the complexity of network optimization's objective functions. In contrast, diffusion generative models can consider a broader range of solutions and exhibit stronger generalization by learning parameters that describe the distribution of the underlying solution space, with higher probabilities assigned to better solutions. We propose a new framework Diffusion Model-based Solution Generation (DiffSG), which leverages the intrinsic distribution learning capabilities of diffusion generative models to learn high-quality solution distributions based on given inputs. The optimal solution within this distribution is highly probable, allowing it to be effectively reached through repeated sampling. We validate the performance of DiffSG on several typical network optimization problems, including mixed-integer non-linear programming, convex optimization, and hierarchical non-convex optimization. Our results show that DiffSG outperforms existing baselines. In summary, we demonstrate the potential of diffusion generative models in tackling complex network optimization problems and outline a promising path for their broader application in the communication community.

In this paper, we study an under-explored but important factor of diffusion generative models, i.e., the combinatorial complexity. Data samples are generally high-dimensional, and for various structured generation tasks, there are additional attributes which are combined to associate with data samples. We show that the space spanned by the combination of dimensions and attributes is insufficiently sampled by existing training scheme of diffusion generative models, causing degraded test time performance. We present a simple fix to this problem by constructing stochastic processes that fully exploit the combinatorial structures, hence the name ComboStoc. Using this simple strategy, we show that network training is significantly accelerated across diverse data modalities, including images and 3D structured shapes. Moreover, ComboStoc enables a new way of test time generation which uses insynchronized time steps for different dimensions and attributes, thus allowing for varying degrees of control over them.

Score function estimation is the cornerstone of both training and sampling from diffusion generative models. Despite this fact, the most commonly used estimators are either biased neural network approximations or high variance Monte Carlo estimators based on the conditional score. We introduce a novel nearest neighbour score function estimator which utilizes multiple samples from the training set to dramatically decrease estimator variance. We leverage our low variance estimator in two compelling applications. Training consistency models with our estimator, we report a significant increase in both convergence speed and sample quality. In diffusion models, we show that our estimator can replace a learned network for probability-flow ODE integration, opening promising new avenues of future research.

Diffusion-based generative models represent the current state-of-the-art for image generation. However, standard diffusion models are based on Euclidean geometry and do not translate directly to manifold-valued data. In this work, we develop extensions of both score-based generative models (SGMs) and Denoising Diffusion Probabilistic Models (DDPMs) to the Lie group of 3D rotations, SO(3). SO(3) is of particular interest in many disciplines such as robotics, biochemistry and astronomy/cosmology science. Contrary to more general Riemannian manifolds, SO(3) admits a tractable solution to heat diffusion, and allows us to implement efficient training of diffusion models. We apply both SO(3) DDPMs and SGMs to synthetic densities on SO(3) and demonstrate state-of-the-art results. Additionally, we demonstrate the practicality of our model on pose estimation tasks and in predicting correlated galaxy orientations for astrophysics/cosmology.

Understanding how proteins structurally interact is crucial to modern biology, with applications in drug discovery and protein design. Recent machine learning methods have formulated protein-small molecule docking as a generative problem with significant performance boosts over both traditional and deep learning baselines. We achieve state-ofthe-art performance on DIPS with a median C-RMSD of 4.85, outperforming all considered baselines. Proteins realize their myriad biological functions through interactions with biomolecules, such as other proteins, nucleic acids, or small molecules. The presence or absence of such interactions is dictated in part by the geometric and chemical complementarity of participating bodies. Thus, learning how individual proteins form complexes is crucial to understanding protein activity.

With the release of platforms like DALL-E 2 and Midjourney, diffusion generative models have achieved mainstream popularity, owing to their ability to generate a series of absurd, breathtaking, and often meme-worthy images from text prompts like "teddy bears working on new AI research on the moon in the 1980s." But a team of researchers at MIT's Abdul Latif Jameel Clinic for Machine Learning in Health (Jameel Clinic) thinks there could be more to diffusion generative models than just creating surreal images -- they could accelerate the development of new drugs and reduce the likelihood of adverse side effects. A paper introducing this new molecular docking model, called DiffDock, will be presented at the 11th International Conference on Learning Representations. The model's unique approach to computational drug design is a paradigm shift from current state-of-the-art tools that most pharmaceutical companies use, presenting a major opportunity for an overhaul of the traditional drug development pipeline. Drugs typically function by interacting with the proteins that make up our bodies, or proteins of bacteria and viruses.

Diffusion probabilistic models have quickly become a major approach for generative modeling of images, 3D geometry, video and other domains. However, to adapt diffusion generative modeling to these domains the denoising network needs to be carefully designed for each domain independently, oftentimes under the assumption that data lives in a Euclidean grid. In this paper we introduce Diffusion Probabilistic Fields (DPF), a diffusion model that can learn distributions over continuous functions defined over metric spaces, commonly known as fields. We extend the formulation of diffusion probabilistic models to deal with this field parametrization in an explicit way, enabling us to define an end-to-end learning algorithm that side-steps the requirement of representing fields with latent vectors as in previous approaches (Dupont et al., 2022a; Du et al., 2021). We empirically show that, while using the same denoising network, DPF effectively deals with different modalities like 2D images and 3D geometry, in addition to modeling distributions over fields defined on non-Euclidean metric spaces.

Diffusion generative models have recently been applied to domains where the available data can be seen as a discretization of an underlying function, such as audio signals or time series. However, these models operate directly on the discretized data, and there are no semantics in the modeling process that relate the observed data to the underlying functional forms. We generalize diffusion models to operate directly in function space by developing the foundational theory for such models in terms of Gaussian measures on Hilbert spaces. A significant benefit of our function space point of view is that it allows us to explicitly specify the space of functions we are working in, leading us to develop methods for diffusion generative modeling in Sobolev spaces. Our approach allows us to perform both unconditional and conditional generation of function-valued data. We demonstrate our methods on several synthetic and real-world benchmarks.

AI-based molecule generation provides a promising approach to a large area of biomedical sciences and engineering, such as antibody design, hydrolase engineering, or vaccine development. Because the molecules are governed by physical laws, a key challenge is to incorporate prior information into the training procedure to generate high-quality and realistic molecules. We propose a simple and novel approach to steer the training of diffusion-based generative models with physical and statistics prior information. This is achieved by constructing physically informed diffusion bridges, stochastic processes that guarantee to yield a given observation at the fixed terminal time. We develop a Lyapunov function based method to construct and determine bridges, and propose a number of proposals of informative prior bridges for both high-quality molecule generation and uniformity-promoted 3D point cloud generation. With comprehensive experiments, we show that our method provides a powerful approach to the 3D generation task, yielding molecule structures with better quality and stability scores and more uniformly distributed point clouds of high qualities.